running
mpiexec -np 2 -host localhost,node003 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 14 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/Consensus90230.fa -d /common/clcbfxcell/databases/swissprot.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/Consensus90230_swiss.txt
Other notes on annotation
Following RNA seq, identified ~5881 differentially expressed genes.
Took about 7 hours on BFX, two nodes 8 cpu each on SWISS PRO
Running same query on PRO, CLC all cpus (4) 10+ hours (still running)
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notes on spreadsheet- "-" is increased expression in laby infected
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trying blastn on 5881 differentially expressed genes.
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running megablast on Galaxy
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90320 died, got about 50k
restarted the last half against Swiss-pro